Installation Guide

You can easily install cytomulate one with command! Follow the installation guide and you will be able to cytomutate within minutes!

Conda

You can easily install cytomulate from conda:

conda install -c normalizingflow cytomulate

PyPI

If you prefer PyPI, the installation is easy as well:

pip install cytomulate

Dependencies

These are the core dependencies that you will need for cytomulate. They should be automatically installed with pip or conda, but if there is an issue, you can elect to install on your own.

  • scikit-learn

  • numpy

  • scipy

  • networkx

  • matplotlib

  • tqdm

Optional Dependency: PyCytoData

If you would like compatibility with PyCytoData, you can install an optional dependency in the following way:

pip install PyCytoData

or via conda:

conda install pycytodata -c kevin931 -c bioconda

Now, you can have the option to output your simulation results in a PyCytoData object.

Note

PyCytoData requires Python>=3.7, which is stricter than cytomulate. If you are still running an older version, please consider upgrading.

PyCytoData Alliance